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The '''International Crop Information System''' (ICIS) is a [[Database management system|database system]] that provides integrated management of global information on crop improvement and management both for individual crops and for farming systems. Ambiguous [[germplasm]] identification, difficulty in tracing pedigree information and lack of integration between genetic resources, breeding, evaluation, utilization and management data have constrained development of more knowledge-intensive crop research efforts. ICIS is being developed by agricultural scientists and information technicians in several centres of the Consultative Group for [[International agricultural research|International Agricultural Research]] (CGIAR), in Advanced Research Institutions (ARIs), and in National Agricultural Research Systems (NARSs) to address these constraints.
The '''International Crop Information System''' (ICIS) was an open-source [[Database management system|database system]] led by researchers from the [[International Rice Research Institute|International Rice Research Institute (IRRI)]]<ref name="Yates">{{Cite web|last=Yates|first=Shawn|last2=Lagüe|first2=Martin|date=October 26, 2018|title=Crop Information Engine and Research Assistant (CIERA) for managing genealogy, phenotypic and genotypic data for breeding programs|url=https://www.biorxiv.org/content/10.1101/439505v4.full.pdf|url-status=live|archive-url=|archive-date=|access-date=August 3, 2020|website=}}</ref> that provided integrated management of global information on crop improvement and management both for individual crops and for farming systems. The project was motivated by ambiguous [[germplasm]] identification, difficulty in tracing pedigree information, and lack of integration between genetic resources, breeding, evaluation, utilization and management data, all of which had constrained development of more knowledge-intensive crop research efforts. In conjunction with the IRRI, ICIS was developed by agricultural scientists and information technicians in several centres of the Consultative Group for [[International agricultural research|International Agricultural Research]] (CGIAR), in Advanced Research Institutions (ARIs), and in National Agricultural Research Systems (NARSs) to address these constraints.


The project was discontinued in 2011.<ref name="Yates" />
==Notes==

==Implementations==
The rice implementation of the ICIS was referred to as the "International Rice Information System", or "IRIS".<ref>{{Cite web|last=ABC|first=Robert|date=|title=LEXSYS: Architecture and Implication for Intelligent Agent systems|url=https://arxiv.org/pdf/1003.5173.pdf|url-status=live|archive-url=|archive-date=|access-date=August 3, 2020|website=arXiv}}</ref> There were other implementations for other crops, including a wheat implementation known as "IWIS", one for lentils known as "ILIS", chickpeas "IChIS", faba bean "IFIS", and more.<ref>{{Cite book|last=Yadav|first=Shyam Singh|url=https://books.google.com/books?id=nyQo02MeXGYC&pg=PA413&lpg=PA413&dq=%22ichis%22+international+crop+management&source=bl&ots=lCnDNzbG1v&sig=ACfU3U2otYUpbscvhDtQkTtKVV8yXlV5gg&hl=en&sa=X&ved=2ahUKEwig3dLc1IDrAhUTNn0KHYnxD0MQ6AEwD3oECAoQAQ#v=onepage&q=%22ichis%22%20international%20crop%20management&f=false|title=Climate Change and Management of Cool Season Grain Legume Crops|last2=McNeil|first2=David L.|last3=Redden|first3=Robert|last4=Patil|first4=Sharanagouda A.|date=2010-06-03|publisher=Springer Science & Business Media|isbn=978-90-481-3709-1|language=en}}</ref><ref>{{Cite web|last=anchoret-wright|date=2014-11-18|title=International Crop Information System : Its Development and Rice &amp; Wheat Implementation|url=https://www.slideserve.com/anchoret-wright/international-crop-information-system-its-development-and-rice-wheat-implementation|access-date=2020-08-04|website=SlideServe|language=en}}</ref>

==References==
<references/>
<references/>


==ICIS Specific References==
===ICIS-specific references===
*Bruskiewich R, Cosico A, Eusebio W, Portugal A, Ramos LR, Reyes T, Sallan MAB, Ulat VJM, Wang X, McNally KL, Sackville Hamilton R and McLaren CG. "Linking Genotype To Phenotype: The International Rice Information System (IRIS)." 2003. ''Bioinformatics'' 19(Suppl.1):i63-i65
*Bruskiewich R, Cosico A, Eusebio W, Portugal A, Ramos LR, Reyes T, Sallan MAB, Ulat VJM, Wang X, McNally KL, Sackville Hamilton R and McLaren CG. "Linking Genotype To Phenotype: The International Rice Information System (IRIS)." 2003. ''Bioinformatics'' 19(Suppl.1):i63-i65
*Fox, PN. and Skovmand, B. (1996). "The International Crop Information System (ICIS) - connects genebank to breeder to farmer’s field." ''Plant adaptation and crop improvement'' (eds. M. Cooper and G.L. Hammer), CAB International. pp 317–326.
*Fox, PN. and Skovmand, B. (1996). "The International Crop Information System (ICIS) - connects genebank to breeder to farmer’s field." ''Plant adaptation and crop improvement'' (eds. M. Cooper and G.L. Hammer), CAB International. pp 317–326.
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*Portugal, Arllet; Balachandra, Ranjan; Metz, Thomas; Bruskiewich, Richard and McLaren, Graham; "International Crop [[Information system|Information System]] for Germplasm [[Data management|Data Management]]." 2007, ''Plant Bioinformatics: Methods and Protocols.'' Dave Edwards, Editor. ''Methods Mol Biol.''406:459-72 Humana Press. [[Totowa, New Jersey]], USA
*Portugal, Arllet; Balachandra, Ranjan; Metz, Thomas; Bruskiewich, Richard and McLaren, Graham; "International Crop [[Information system|Information System]] for Germplasm [[Data management|Data Management]]." 2007, ''Plant Bioinformatics: Methods and Protocols.'' Dave Edwards, Editor. ''Methods Mol Biol.''406:459-72 Humana Press. [[Totowa, New Jersey]], USA


==Related Project References==
===Related project references===
*Bruskiewich, Richard ''et al'' 2008 "The Generation Challenge Programme Platform: Semantic Standards and Workbench for [[Crop science|Crop Science]]", ''International Journal of Plant Genomics'', vol. 2008, Article ID 369601, 6 pages. {{doi|10.1155/2008/369601}}
*Bruskiewich, Richard ''et al'' 2008 "The Generation Challenge Programme Platform: Semantic Standards and Workbench for [[Crop science|Crop Science]]", ''International Journal of Plant Genomics'', vol. 2008, Article ID 369601, 6 pages. {{doi|10.1155/2008/369601}}
*Bruskiewich, Richard ''et al'' 2006. ''The Generation Challenge Programme (GCP)-Standards for Crop Data.'' OMICS 10(2):215-219
*Bruskiewich, Richard ''et al'' 2006. ''The Generation Challenge Programme (GCP)-Standards for Crop Data.'' OMICS 10(2):215-219

Revision as of 04:03, 4 August 2020

The International Crop Information System (ICIS) was an open-source database system led by researchers from the International Rice Research Institute (IRRI)[1] that provided integrated management of global information on crop improvement and management both for individual crops and for farming systems. The project was motivated by ambiguous germplasm identification, difficulty in tracing pedigree information, and lack of integration between genetic resources, breeding, evaluation, utilization and management data, all of which had constrained development of more knowledge-intensive crop research efforts. In conjunction with the IRRI, ICIS was developed by agricultural scientists and information technicians in several centres of the Consultative Group for International Agricultural Research (CGIAR), in Advanced Research Institutions (ARIs), and in National Agricultural Research Systems (NARSs) to address these constraints.

The project was discontinued in 2011.[1]

Implementations

The rice implementation of the ICIS was referred to as the "International Rice Information System", or "IRIS".[2] There were other implementations for other crops, including a wheat implementation known as "IWIS", one for lentils known as "ILIS", chickpeas "IChIS", faba bean "IFIS", and more.[3][4]

References

  1. ^ a b Yates, Shawn; Lagüe, Martin (October 26, 2018). "Crop Information Engine and Research Assistant (CIERA) for managing genealogy, phenotypic and genotypic data for breeding programs" (PDF). Retrieved August 3, 2020.{{cite web}}: CS1 maint: url-status (link)
  2. ^ ABC, Robert. "LEXSYS: Architecture and Implication for Intelligent Agent systems" (PDF). arXiv. Retrieved August 3, 2020.{{cite web}}: CS1 maint: url-status (link)
  3. ^ Yadav, Shyam Singh; McNeil, David L.; Redden, Robert; Patil, Sharanagouda A. (2010-06-03). Climate Change and Management of Cool Season Grain Legume Crops. Springer Science & Business Media. ISBN 978-90-481-3709-1.
  4. ^ anchoret-wright (2014-11-18). "International Crop Information System : Its Development and Rice & Wheat Implementation". SlideServe. Retrieved 2020-08-04.

ICIS-specific references

  • Bruskiewich R, Cosico A, Eusebio W, Portugal A, Ramos LR, Reyes T, Sallan MAB, Ulat VJM, Wang X, McNally KL, Sackville Hamilton R and McLaren CG. "Linking Genotype To Phenotype: The International Rice Information System (IRIS)." 2003. Bioinformatics 19(Suppl.1):i63-i65
  • Fox, PN. and Skovmand, B. (1996). "The International Crop Information System (ICIS) - connects genebank to breeder to farmer’s field." Plant adaptation and crop improvement (eds. M. Cooper and G.L. Hammer), CAB International. pp 317–326.
  • McLaren, CG; Bruskiewich, RM; Portugal, AM; Cosico, AB. 2005. "The International Rice Information System. a platform for meta-analysis of rice crop data." Plant Physio. 139 (2): 637-642
  • Portugal, Arllet; Balachandra, Ranjan; Metz, Thomas; Bruskiewich, Richard and McLaren, Graham; "International Crop Information System for Germplasm Data Management." 2007, Plant Bioinformatics: Methods and Protocols. Dave Edwards, Editor. Methods Mol Biol.406:459-72 Humana Press. Totowa, New Jersey, USA
  • Bruskiewich, Richard et al 2008 "The Generation Challenge Programme Platform: Semantic Standards and Workbench for Crop Science", International Journal of Plant Genomics, vol. 2008, Article ID 369601, 6 pages. doi:10.1155/2008/369601
  • Bruskiewich, Richard et al 2006. The Generation Challenge Programme (GCP)-Standards for Crop Data. OMICS 10(2):215-219
  • Bruskiewich R, Metz T and McLaren G. 2006. Bioinformatics and crop information systems in rice research. IRRN 31(1):5-12


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